Part 1 of the gene expression module from a workshop held at the National Library of Medicine in April 2013 called, "A Librarian's Guide to NCBI." These are introductory level videos, suitable for beginning or intermediate users of NCBI resources and for those with little background in molecular biology.
Views: 39861 NCBI
This video guides you through ClinVar search strategies so that you can find what you seek more efficiently. Example queries include gene names, HGVS expressions, and phenotypes. It also shows you how to use NCBI's Variation Viewer to see variants in a genomic context.
Views: 6411 NCBI
Part 2 of the gene expression module from a workshop at the National Library of Medicine in April 2013 called, "A Librarian's Guide to NCBI." These are introductory level videos, suitable for beginning or intermediate users of NCBI resources and for those with little background in molecular biology.
Views: 18974 NCBI
Presented March 29, 2017. This short webinar guides you through the submission of prokaryotic 16S rRNA sequences to GenBank using one of the new Submission Wizards. You will learn what information you need to get started, and see a demonstration of the submission interface with a real example. You'll also learn about common problems you may encounter, how to deal with them and what to expect after you click the submit button. https://submit.ncbi.nlm.nih.gov/subs/genbank/ To get video updates, subscribe to the NCBI YouTube channel: www.youtube.com/ncbinlm
Views: 12341 NCBI
This quick tutorial shows you how to use BLAST to identify your 16S sequences, and provides a few BLAST search tips. NCBI provides a curated database of 16S sequences from well-supported type material that is a subset of the BLAST nt database. To get video updates, subscribe to the NCBI YouTube channel: www.youtube.com/ncbinlm
Views: 5104 NCBI
Presented April 8, 2015. This nine-minute webinar introduces MOLE-BLAST, a tool for clustering targeted sequences such as those from 16S rRNA with database sequences ,and providing taxonomic context. MOLE-BLAST can quickly establish taxonomy for sequences from uncultured or environmental sequences. For more information about our webinars, please see: www.ncbi.nlm.nih.gov/home/coursesandwebinars.shtml
Views: 6260 NCBI
How to download FASTA sequence for certain gene features while in the NCBI's Sequence Viewer. Sequence Viewer homepage: www.ncbi.nlm.nih.gov/projects/sviewer/ Sequence Viewer playlist: https://www.youtube.com/playlist?list=PL76D7EE6A6A8AC1C3
Views: 12151 NCBI
Sydney Brenner Salk Institute, San Diego, CA
Views: 1841 NCBI
Presented July 6, 2016. NCBI has a completely redesigned Open Reading Frame Finder (ORFfinder) that quickly identifies complete coding regions on prokaryotic genomic and eukaryotic mRNA sequences and provides the protein translation. ORFfinder can submit the results to SmartBLAST or standard protein BLAST to identify the predicted proteins. You will learn how to access and use ORFfinder to analyze predicted coding regions. Get video updates, subscribe to the NCBI YouTube channel: www.youtube.com/ncbinlm Find other NCBI webinars: www.ncbi.nlm.nih.gov/home/coursesandwebinars.shtml
Views: 5704 NCBI
Learn how to view variation and genotype data, as well as supporting sequence reads from the 1000 genomes project. Later videos will cover other functions, such as uploading your data. For video updates, subscribe to our YouTube channel: www.youtube.com/ncbinlm
Views: 9647 NCBI
This video shows you how to rapidly find variants related to human disease in the NCBI ClinVar resource as well as how to download batches of variants and related information in .xml and .vcf format. Get video updates, subscribe to the NCBI YouTube channel: www.youtube.com/ncbinlm Find other NCBI webinars: http://www.ncbi.nlm.nih.gov/home/coursesandwebinars.shtml
Views: 3895 NCBI
Presented March 1, 2017. Many people use My NCBI alerts to be notified when new citations of interest appear in PubMed. But you can also set alerts for new datasets in the traditional sequence databases, as well as SRA and GEO. In this webinar, you learn how to configure dataset notifications for new molecular data using My NCBI. To get video updates, subscribe to the NCBI YouTube channel: www.youtube.com/ncbinlm
Views: 1337 NCBI
This is a brief introduction to a new set of sequence viewer renderings that better display discrepancies between genomic sequence and annotated features. These discrepancies can occur because RefSeq gene models based on the current genomic sequence can differ from RefSeq transcripts and corresponding proteins that come from our continuous curation efforts. This sequence viewer tutorial has links to examples used in this video: www.ncbi.nlm.nih.gov/tools/sviewer/translationdiscrepancies/ To get video updates, subscribe to the NCBI YouTube channel: www.youtube.com/ncbinlm
Views: 1393 NCBI
Learn how to import BAM files, create a BAM index file, and export selected alignments using NCBI's Genome Workbench. See the Genome Workbench homepage: www.ncbi.nlm.nih.gov/tools/gbench/
Views: 5055 NCBI
This is a brief introduction announcing a new feature in NCBI's genome browser, GDV, the Genome Data Viewer. The GDV now displays and provides a search interface to the Track Hub Registry based an EMBL-EBI.
Views: 966 NCBI
This video is a quick, broad overview of how MedGen addresses the needs of clinical practitioners and researchers needing clinical genetics and pharmacogenetics resources.
Views: 741 NCBI
Presented April 15, 2015. This brief, 4 minute presentation demonstrates how to search for genomic studies and quickly identify related PubMed articles and experimental data, such as RNAseq datasets; and how to submit these data to SRA BLAST. For more information about our webinars, please see: http://www.ncbi.nlm.nih.gov/home/coursesandwebinars.shtml
Views: 3004 NCBI
Learn how to process fastq files, the most common raw data file in next generation sequencing (NGS), so that they are ready for alignment and subsequent variant calling. Dr. Sijung Yun provides a detailed description of the anatomy of these files, as well as how to filter them for quality, which is critical for almost all projects. The filtering tutorial is presented in the galaxy framework, an excellent environment for learning NGS.
Views: 7671 NCBI
This video provides a quick overview of the Genome Data Viewer's many capabilities. It is a genome browser supporting more than 500 eukaryotic genome assemblies. See the Help and Release Notes documentation for more information: https://www.ncbi.nlm.nih.gov/genome/gdv/browser/help/ https://www.ncbi.nlm.nih.gov/genome/gdv/browser/release-notes/ To get video updates, subscribe to the NCBI YouTube channel: www.youtube.com/ncbinlm
Views: 4852 NCBI
Presented November 12, 2015. In this Webinar designed for scientists you will learn to more efficiently search by author; explore a subject; use filters to narrow your search; find the full text article; and set up an e-mail alert for new research on your topic. Includes an informative question and answer period. For video updates, subscribe to our YouTube channel: www.youtube.com/ncbinlm
Views: 44928 NCBI
The latest addition to NCBI's genome browser, the Genome Data Viewer, is the BLAST widget. This video is a brief introduction to how the BLAST widget helps you visualize your BLAST results in the context of assembled genome sequences. The Genome Data Viewer: https://www.ncbi.nlm.nih.gov/genome/gdv/ To get video updates, subscribe to the NCBI YouTube channel: www.youtube.com/ncbinlm
Views: 2367 NCBI